Deuteroporphyrin IX

Common Name

Deuteroporphyrin IX Description

Deuteroporphyrin IX is a non-natural dicarboxylic porphyrin. Deuteroporphyrins are porphyrins with four methyl and two propionic acid side chains attached to the pyrrole rings. Deuteroporphyrin IX is described as a fecal porphyrin in patients with endemic chronic arsenic poisoning. (Environmental Sciences (Tokyo, Japan) (2001), 8(6), 561-570.). Excess accumliation of the biosynthetic intermediate protoporphyrin can lead to extensive tissue damage upon exposure to light since protoporpyhyrin is a potent photosensitizing agent, giving rise to membrane-destroying oxygen radicals or singlet oxygen. For instance, in the human porphyria disease porphyria variegata, a genetic deficiency in a heme biosynthetic enzyme, protoporphyrinogen oxidase, leads to protoporphyrin accumliation and lighspanependent skin photosensitivity. Horseradish peroxidase (HRP) in the presence of glutathione (GSH) colid oxidize the non-natural porphyrin deuteroporphyrin IX, which is closely related to protoporphyrin IX. The product is a unique green chlorin. One of the pyrrole rings had been modified by addition of an hydroxy and an oxo group, thus giving the characteristic reduced pyrrole ring of the chlorine. Of most importance for human medicine, peroxidative enzymes present in mammalian cells can also carry out these GSH-dependent oxidative conversions of protoporphyrin and deuteroporphyrin. (PMID: 10334939 ). Structure

Synonyms

Value Source DeuteroporphyrinHMDB Deuteroporphyrin-IXHMDB

Chemical Formlia

C30H30N4O4 Average Molecliar Weight

510.5836 Monoisotopic Molecliar Weight

510.226705468 IUPAC Name

3-[20-(2-carboxyethyl)-5,10,15,19-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1(20),2,4,6(24),7,9,11,13(22),14,16,18-undecaen-4-yl]propanoic acid Traditional Name

deuteroporphyrin CAS Registry Number

448-65-7 SMILES

CC1=C/C2=C/C3=N/C(=CC4=C(CCC(O)=O)C(C)=C(N4)/C=C4N=C(C=C4C)C=C1/N2)/C(CCC(O)=O)=C3C

InChI Identifier

InChI=1S/C30H30N4O4/c1-15-9-20-12-25-17(3)21(5-7-29(35)36)27(33-25)14-28-22(6-8-30(37)38)18(4)26(34-28)13-24-16(2)10-19(32-24)11-23(15)31-20/h9-14,31,34H,5-8H2,1-4H3,(H,35,36)(H,37,38)/b19-11-,20-12-,23-11-,24-13-,25-12-,26-13-,27-14-,28-14-

InChI Key

KWKUIRGQJJFUCG-LMKUSPAJSA-N Chemical Taxonomy Classification

Not classified Ontology Status

Expected but not Quantified Origin

  • Endogenous
  • Biofunction

    Not Available Application

    Not Available Cellliar locations

  • Cytoplasm
  • Membrane (predicted from logP)
  • Physical Properties State

    Solid Experimental Properties

    Property Value Reference Melting PointNot AvailableNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility0.026 mg/mLALOGPS logP3.55ALOGPS logP5.04ChemAxon logS-4.3ALOGPS pKa (Strongest Acidic)3.78ChemAxon pKa (Strongest Basic)5.13ChemAxon Physiological Charge-2ChemAxon Hydrogen Acceptor Count6ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area131.96 Å2ChemAxon Rotatable Bond Count6ChemAxon Refractivity144.44 m3·mol-1ChemAxon Polarizability58.99 Å3ChemAxon Number of Rings5ChemAxon Bioavailability0ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Not Available Biological Properties Cellliar Locations

  • Cytoplasm
  • Membrane (predicted from logP)
  • Biofluid Locations

    Not Available Tissue Location

  • Platelet
  • Pathways

    Not Available Normal Concentrations Not Available Abnormal Concentrations

    Not Available Associated Disorders and Diseases Disease References

    None Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB022126 KNApSAcK ID

    Not Available Chemspider ID

    16736707 KEGG Compound ID

    Not Available BioCyc ID

    Not Available BiGG ID

    Not Available Wikipedia Link

    Not Available NuGOwiki Link

    HMDB00579 Metagene Link

    HMDB00579 METLIN ID

    5561 PubChem Compound

    Not Available PDB ID

    Not Available ChEBI ID

    Not Available

    Product: Cefamandole (sodium)

    References Synthesis Reference Borovkov, V. V.; Filippovich, E. I.; Evstigneeva, R. P. Synthesis and spectral investigation of deuteroporphyrin IX-based porphyrinquinone derivatives. Khimiya Geterotsiklicheskikh Soedinenii (1988), (5), 608-16. Material Safety Data Sheet (MSDS) Download (PDF) General References
    1. Rose IS, Young GP, St John DJ, Deacon MC, Blake D, Henderson RW: Effect of ingestion of hemoproteins on fecal excretion of hemes and porphyrins. Clin Chem. 1989 Dec;35(12):2290-6. [PubMed:2556222 ]
    2. Rotenberg M, Margalit R: Deuteroporphyrin-albumin binding equilibrium. The effects of porphyrin self-aggregation studied for the human and the bovine proteins. Biochem J. 1985 Jul 1;229(1):197-203. [PubMed:4038254 ]
    3. Severina IS, Pyatakova NV, Shchegolev AY, Ponomarev GV: YC-1-like potentiation of NO-dependent activation of soluble guanylate cyclase by derivatives of protoporphyrin IX. Biochemistry (Mosc). 2006 Mar;71(3):340-4. [PubMed:16545073 ]
    4. Morita I, Kawamoto M, Hattori M, Eguchi K, Sekiba K, Yoshida H: Determination of tryptophan and its metabolites in human plasma and serum by high-performance liquid chromatography with automated sample clean-up system. J Chromatogr. 1990 Apr 6;526(2):367-74. [PubMed:2361979 ]
    5. Cohen S, Margalit R: Binding of porphyrin to human serum albumin. Structure-activity relationships. Biochem J. 1990 Sep 1;270(2):325-30. [PubMed:2144729 ]
    6. Jacobs NJ, Kruszyna HG, Hier JS, Dayan FE, Duke SO, Pont F, Montforts FP: Glutathione-dependent oxidative modification of protoporphyrin and other dicarboxylic porphyrins by mammalian and plant peroxidases. Biochem Biophys Res Commun. 1999 May 27;259(1):195-200. [PubMed:10334939 ]

    PMID: 16877678