Porphobilinogen

Common Name

Porphobilinogen Description

Porphobilinogen is a pyrrole involved in porphyrin metabolism. — Wikipedia; It consists of a pyrrole ring with acetyl, propionyl, and aminomethyl side chains; It is a key monopyrrolic intermediate in porphyrin, chlorophyll and vitamin B12 biosynthesis. Porphobilinogen is generated by the enzyme ALA dehydratase by combining two moleclies of dALA together, and converted into hydroxymethyl bilane by the enzyme porphobilinogen deaminase. 4 moleclies of porphobilinogen are condensed to form one moleclie of uroporphyrinogen III, which is then converted successively to coproporphyrinogen III, protoporphyrin IX, and heme. Porphobilinogen is produced in excess and excreted in the urine in acute intermittent porphyria and several other porphyrias. Structure

Synonyms

Value Source 5-(Aminomethyl)-4-(carboxymethyl)-pyrrole-3-propionateHMDB 5-(Aminomethyl)-4-(carboxymethyl)-pyrrole-3-propionic acidHMDB PBGHMDB

Chemical Formlia

C10H14N2O4 Average Molecliar Weight

226.2292 Monoisotopic Molecliar Weight

226.095356946 IUPAC Name

3-[5-(aminomethyl)-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid Traditional Name

porphobilinogen CAS Registry Number

487-90-1 SMILES

NCC1=C(CC(O)=O)C(CCC(O)=O)=CN1

InChI Identifier

InChI=1S/C10H14N2O4/c11-4-8-7(3-10(15)16)6(5-12-8)1-2-9(13)14/h5,12H,1-4,11H2,(H,13,14)(H,15,16)

InChI Key

QSHWIQZFGQKFMA-UHFFFAOYSA-N Chemical Taxonomy Description

This compound belongs to the class of chemical entities known as aralkylamines. These are alkylamines in which the alkyl group is substituted at one carbon atom by an aromatic hydrocarbyl group. Kingdom

Chemical entities Super Class

Organic compounds Class

Organic nitrogen compounds Sub Class

Organonitrogen compounds Direct Parent

Aralkylamines Alternative Parents

  • Substituted pyrroles
  • Dicarboxylic acids and derivatives
  • Heteroaromatic compounds
  • Amino acids
  • Carboxylic acids
  • Azacyclic compounds
  • Organopnictogen compounds
  • Organic oxides
  • Monoalkylamines
  • Hydrocarbon derivatives
  • Carbonyl compounds
  • Substituents

  • Aralkylamine
  • Dicarboxylic acid or derivatives
  • Substituted pyrrole
  • Heteroaromatic compound
  • Pyrrole
  • Amino acid
  • Amino acid or derivatives
  • Carboxylic acid derivative
  • Azacycle
  • Carboxylic acid
  • Organoheterocyclic compound
  • Organopnictogen compound
  • Primary amine
  • Organooxygen compound
  • Primary aliphatic amine
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Aromatic heteromonocyclic compound
  • Molecliar Framework

    Aromatic heteromonocyclic compounds External Descriptors

  • dicarboxylic acid (CHEBI:17381 )
  • pyrroles (CHEBI:17381 )
  • aralkylamino compound (CHEBI:17381 )
  • Ontology Status

    Detected and Quantified Origin

  • Endogenous
  • Biofunction

  • Component of Porphyrin and chlorophyll metabolism
  • Application

    Not Available Cellliar locations

  • Cytoplasm (predicted from logP)
  • Physical Properties State

    Solid Experimental Properties

    Property Value Reference Melting PointNot AvailableNot Available Boiling PointNot AvailableNot Available Water SolubilityNot AvailableNot Available LogPNot AvailableNot Available

    Predicted Properties

    Property Value Source Water Solubility2.72 mg/mLALOGPS logP-2.4ALOGPS logP-2.7ChemAxon logS-1.9ALOGPS pKa (Strongest Acidic)3.66ChemAxon pKa (Strongest Basic)8.99ChemAxon Physiological Charge-1ChemAxon Hydrogen Acceptor Count5ChemAxon Hydrogen Donor Count4ChemAxon Polar Surface Area116.41 Å2ChemAxon Rotatable Bond Count6ChemAxon Refractivity56.38 m3·mol-1ChemAxon Polarizability22.53 Å3ChemAxon Number of Rings1ChemAxon Bioavailability1ChemAxon Rlie of FiveYesChemAxon Ghose FilterYesChemAxon Vebers RlieYesChemAxon MDDR-like RlieYesChemAxon

    Spectra Spectra

    Spectrum Type Description Splash Key GC-MS

    GC-MS Spectrum – GC-MS (4 TMS)splash10-001j-1923000000-70c31b91868484322655View in MoNA Predicted GC-MS

    Predicted GC-MS Spectrum – GC-MSNot Available LC-MS/MS

    LC-MS/MS Spectrum – Quattro_QQQ 10V, Positive (Annotated)splash10-0a4i-0090000000-912aa953bdd13d6d18caView in MoNA LC-MS/MS

    LC-MS/MS Spectrum – Quattro_QQQ 25V, Positive (Annotated)splash10-00dl-1900000000-8a87960bb63c4915db22View in MoNA LC-MS/MS

    LC-MS/MS Spectrum – Quattro_QQQ 40V, Positive (Annotated)splash10-006x-9500000000-c934217374e64d6edee3View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Positivesplash10-0a4l-0980000000-423d28b762ba4c07586bView in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Positivesplash10-03dl-0910000000-31575764ba8bd8d50279View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Positivesplash10-074r-0900000000-9d96bd59f1a4371a8df4View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 10V, Negativesplash10-0059-0790000000-2cc911a67c1aa8e35d99View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 20V, Negativesplash10-06ur-0940000000-2c3da60da6ab9523fbf3View in MoNA Predicted LC-MS/MS

    Predicted LC-MS/MS Spectrum – 40V, Negativesplash10-0bt9-4900000000-cf52dffb4284f9eeaa5dView in MoNA

    Biological Properties Cellliar Locations

  • Cytoplasm (predicted from logP)
  • Biofluid Locations

  • Blood
  • Urine
  • Tissue Location

  • Erythrocyte
  • Liver
  • Pathways

    Name SMPDB Link KEGG Link Acute Intermittent PorphyriaSMP00344Not Available Congenital Erythropoietic Porphyria (CEP) or Gunther DiseaseSMP00345Not Available Hereditary Coproporphyria (HCP)SMP00342Not Available Porphyria Variegata (PV)SMP00346Not Available Porphyrin MetabolismSMP00024map00860

    Normal Concentrations

    Biofluid Status Value Age Sex Condition Reference Details BloodDetected and Quantified 0.06 (0.00-0.12) uMAdlit (>18 years old)BothNormal

  • 16497943
  • details UrineDetected and Quantified0.31 +/- 0.13 umol/mmol creatinineChildren (1-13 years old)BothNormal

  • Geigy Scientific …
  • West Cadwell, N.J…
  • Basel, Switzerlan…
  • details UrineDetected and Quantified0.29 +/- 0.14 umol/mmol creatinineAdlit (>18 years old)BothNormal

  • Geigy Scientific …
  • West Cadwell, N.J…
  • Basel, Switzerlan…
  • details UrineDetected and Quantified<=0.579 umol/mmol creatinineAdlit (>18 years old)BothNormal

  • 978-0-911910-19-3
  • details

    Abnormal Concentrations

    Biofluid Status Value Age Sex Condition Reference Details BloodDetected and Quantified3.1 +/- 1.0 uMAdlit (>18 years old)Both

    Porphyria

  • 16497943
  • details

    Associated Disorders and Diseases Disease References

    Porphyria

    1. Floderus Y, Sardh E, Moller C, Andersson C, Rejkjaer L, Andersson DE, Harper P: Variations in porphobilinogen and 5-aminolevliinic acid concentrations in plasma and urine from asymptomatic carriers of the acute intermittent porphyria gene with increased porphyrin precursor excretion. Clin Chem. 2006 Apr;52(4):701-7. Epub 2006 Feb 23. [PubMed:16497943 ]

    Associated OMIM IDs

    None External Links DrugBank ID

    Not Available DrugBank Metabolite ID

    Not Available Phenol Explorer Compound ID

    Not Available Phenol Explorer Metabolite ID

    Not Available FoodDB ID

    FDB021916 KNApSAcK ID

    Not Available Chemspider ID

    995 KEGG Compound ID

    C00931 BioCyc ID

    PORPHOBILINOGEN BiGG ID

    36404 Wikipedia Link

    Porphobilinogen NuGOwiki Link

    HMDB00245 Metagene Link

    HMDB00245 METLIN ID

    76 PubChem Compound

    1021 PDB ID

    PBG ChEBI ID

    17381

    Product: D-Glutamic acid

    References Synthesis Reference Frydman, Benjamin; Despuy, Maria E.; Rapoport, Henry. Pyrroles from azaindoles. A synthesis of porphobilinogen. Journal of the American Chemical Society (1965), 87(15), 3530-1. Material Safety Data Sheet (MSDS) Download (PDF) General References
    1. Dhar GJ, Bossenmaier I, Petryka ZJ, Cardinal R, Watson CJ: Effects of hematin in hepatic porphyria. Further studies. Ann Intern Med. 1975 Jul;83(1):20-30. [PubMed:1147435 ]
    2. Ivanov E, Pisanets M: Studies on the biosynthesis of porphyrins in erythrocytes after incubation with delta-aminolevulinic acid: an attempt to investigate the pathogenesis of nephrogenic anemia. Acta Biol Med Ger. 1982;41(4):307-13. [PubMed:7124248 ]
    3. Ellencweig N, Schoenfeld N, Zemishlany Z: Acute intermittent porphyria: psychosis as the only clinical manifestation. Isr J Psychiatry Relat Sci. 2006;43(1):52-6. [PubMed:16910386 ]
    4. Buchet JP, Lauwerys R, Hassoun A, Dratwa M, Wens R, Collart F, Tielemans C: Effect of aluminum on porphyrin metabolism in hemodialyzed patients. Nephron. 1987;46(4):360-3. [PubMed:3658064 ]
    5. Tishler PV, Woodward B, OConnor J, Holbrook DA, Seidman LJ, Hallett M, Knighton DJ: High prevalence of intermittent acute porphyria in a psychiatric patient population. Am J Psychiatry. 1985 Dec;142(12):1430-6. [PubMed:4073306 ]
    6. Hsiao KJ, Lee FY, Wu SJ, Chang WJ: Determination of erythrocyte porphobilinogen deaminase activity using porphobilinogen as substrate. Clin Chim Acta. 1987 Sep 30;168(2):257-8. [PubMed:3677422 ]
    7. Evans J, Lefkowitch J, Lim CK, Billing B: Fecal porphyrin abnormalities in a patient with features of Rotors syndrome. Gastroenterology. 1981 Dec;81(6):1125-30. [PubMed:7286590 ]
    8. Sassa S, Solish G, Levere RD, Kappas A: Studies in porphyria. IV. Expression of the gene defect of acute intermittent porphyria in cultured human skin fibroblasts and amniotic cells: prenatal diagnosis of the porphyric trait. J Exp Med. 1975 Sep 1;142(3):722-31. [PubMed:1165472 ]
    9. Ford RE, Ou CN, Ellefson RD: Assay for erythrocyte uroporphyrinogen I synthase activity, with porphobilinogen as substrate. Clin Chem. 1980 Jul;26(8):1182-5. [PubMed:7389090 ]
    10. Shiue JW, Lee FY, Hsiao KJ, Tsai YT, Lee SD, Wu SJ: Abnormal thyroid function and hypercholesterolemia in a case of acute intermittent porphyria. Taiwan Yi Xue Hui Za Zhi. 1989 Jul;88(7):729-31. [PubMed:2809566 ]
    11. Mustajoki P: Normal erythrocyte uroporphyrinogen I synthase in a kindred with acute intermittent porphyria. Ann Intern Med. 1981 Aug;95(2):162-6. [PubMed:7258864 ]

    Enzymes

    General function:
    Involved in hydroxymethylbilane synthase activity
    Specific function:
    Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
    Gene Name:
    HMBS
    Uniprot ID:
    P08397
    Molecular weight:
    39329.74
    Reactions
    Porphobilinogen + Water → Hydroxymethylbilane + Ammonia details
    General function:
    Involved in porphobilinogen synthase activity
    Specific function:
    Catalyzes an early step in the biosynthesis of tetrapyrroles. Binds two molecules of 5-aminolevulinate per subunit, each at a distinct site, and catalyzes their condensation to form porphobilinogen.
    Gene Name:
    ALAD
    Uniprot ID:
    P13716
    Molecular weight:
    36294.485
    Reactions
    5-Aminolevulinic acid → Porphobilinogen + Water details

    PMID: 21159886